btbd6 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (2)

Nucleotides (145)

Interactants (19)

XB-GENEPAGE-6258081

[provisional- machine annotated only] Gene Symbol: btbd6 [Predicted: Source is Human Entrez Gene] Gene Name: BTB (POZ) domain containing 6 [Predicted: Source is Human Entrez Gene] Synonyms: xbtbd6 Add Xenopus synonyms Gene Function: Interactants: b3gat1(1) , cer1(1) , chrd(1) , cul3(1) , dkk1(1) , frzb2(1) , gpr107(1) View All	1/3

XB-GENE-6258082

XB-GENE-6251792

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001078842\|Xenopus (Silurana) tropicalis BTB (POZ) domain containing 6 (btbd6), mRNA GCGCTCTGCGATACGCTGGGCATATGCTCCGCAACACAAAAGCAGCAGAAGCAGCTGGTGCATCCCAGAGAGGCAAATCGCAGCCCCGCATTACTCGCTAGGATGTGATTGCCCGGCGTGCCCACTGCTAGGGGCTGTGTGGGATTACCGTGCCAGCGGATAAGGAGACGTGGCAGGGCTGGATACTGGGGTCTTGGGGTTTGAGAAGCATCTTGGGAGTGTAAGCGCTGGCCTTGGAGTGCCCTCCCTCGGTTGGGCGCATTATTGCCCTGTGATGGACTATCTATCGGTGCGGGACTCAGATCGCTTGGCAAGTTCTAGGAGACTGTCTCATCGGGTGGCTGATGCCCAAGCCATCGCACAGAGGACCTGCTGCTAGCCGCCCCCTTGCCCATGCCACTAGACCCAGGCTGCCTTAATGGCAGGGTCATGAAGTGTTTGACTTTCTTTCTTCTGCTTCCAGAGACCTTAAAGAAGTCTAGAAAGAGTGCCAGGGCACAGGGCAAGGTGCAAGCATGCTATGAGATAGTGCCCTTGGCCCTCAAGAAGAAGATGGCTGCAGAGCTTTACCCTGCCAGCGCAAACACCAATATCGCTAACAGTAACGCCGCTGCCAACGCCAAGAAGAACGCCCTCCAGCTCCAGCAGGCTGCCCCGCCGCCGCCGCAACTCCACAACCTCAACAACAACAACATTGAGAGCGGCAACTGGCAGTCCTTCCACCCGACCCTGCGGGAGAGGAATGCTCTAATGTTCAACAACGAGCTTATGGCGGACGTTCACTTCATTGTGGGCCCAGCAGGGGCCTCAAAGAAAGTTCCTGCCCACAAGTATATTTTGGCTGTGGGTAGCTCTGTGTTCTACGCAATGTTTTATGGAGACCTTGCTGAAGTGAAATCTGAAATCCATATTCCAGATGTGGAGCCTGCAGCTTTTCTAATCCTTTTAAAGTACTTGTATAGTGATGAAATCGACCTGGAAGCAGACACGGTGCTTGCAACACTCTATGCTGCCAAAAAGTACATAGTACCGGCCTTGGCTAAAGCCTGCGTTAACTTCCTGGAGACCAGTTTAGAGGCAAAGAATGCATGTGTTCTGCTCTCTCAGAGCCGTCTTTTTGAAGAGCCAGATCTCACTCTGCGCTGCTGGGAAGTCATAGACGCTCAAGCTGAACTGGCACTAAAGTCAGAGGGTTTCTGTGAAATAGATCTGCAAACCCTGGAGATTATTGTTACGCGTGAGACACTAAACACTAAAGAAGATGTTGTTTTTGAGGCAGTTTTGAACTGGGCTGAGGCAGAGTGCAAAAGACAAGGTTTGTCAATCACGCCAGTCAACAAAAGGAATGTTTTGGGAAAGGCCTTATACCTGGTACGGATTCCCACTATGACTTTGGAGGAATTTGCCAACGGAGCTGCCCAATCAGATATTTTAACCCTAGAGGAAACAAGAAGTATATTCCTCTGGTACACAGCTGCTAATAAACCTCAGCTGGAGTTCCCTCTAATAAAGAGGAAAGGACTTGCACCTCAGCGTTGCCACAGGTTTCAATCCTCAGCATATCGCAGTAATCAGTGGAGGTACCGGGGACGCTGTGACAGCATCCAATTTGCAGTTGACAAAAGGATATTTATAGCAGGACTGGGGCTTTATGGTTCAAGCTGCGGTAAAGCAGAGTACAGTGTCAAGATAGAACTGAAGAGACAGGGAGCAGTTCTGGCCCAAAATCTGACTAAATTTGTTTCCGATGGCTCCAGCAACACATTCTCTGTGTGGTTTGAACACCCCGTGCAGGTTGAGCAAGATACTTTTTACACTGTAAGCGCCATTCTTGATGGTAATGAACTCAGTTATTTCGGACAGGAGGGAATGACAGAAGTACAGTGTGGAAAGGTTACATTTCAATTCCAGTGCTCTTCAGACAGCACCAATGGGACTGGGGTACAAGGTGGACAAATTCCAGAGCTCATCTTTTATGCATGATGCATTTAATTTCTGAAACACTACTGCAAAGCACACCAACTCTTCCACACCACCCTTCCCTTTGAAAGGGGTCTGCAACACAGTGGTTAACCCGCTTTCTGCTGGTTTTGCCTGCAACGCACTGAAAAGGGTGAAGGGAGAGTTATAATTTATGCTGTTTGTCAGTATGGAATGTAGCAAAATGGTCAGCAAAACACCAACTGAAGGAATGCTTGTAGACTTTAATCTAATTTATTTATAAGCTATTTGAATTTAATTATTAAAACTGCATCATGCAGGGAGAGGTTTAAAAAGATCTGCGCATAATGTGCATTTATTTTGTATATAGATAACTTACTTAAAATGTTAAATTGCCGCTTGCTCGGGGTAGAGCAGCTTATAAATATGTGAGACATAAAATGTTTTTACTTATACCCTA	Refseq >NM_001088719\|Xenopus laevis BTB domain protein 6 (p7e4), mRNA CGGCACGAGGGGCCTGTCCGCTGCTAAGGGGTGTGAGGAATTAACGTGTGAGAAGACGTGGCTATTGAGAGTGGGTGTTTGAGAAGAATACAGAGAGTGTACGCGCTAGCCTTGGACTGTCTCACTGGTTCGGCCGCATTATTACTGCCCTGTGATGGACTGTGTCTCCGAGTGCGACTGTGATCGCTCGGCAAGTTGTAAGAGAGCGACAGATCGGCTGACTGATGCCCAGTCCCTCGCACACACGAGCCGCCGCTAGCTGCCCCCTTGCCCATGCCACTAGACCCAGGCTGCCTTAATGGCAGGGTCATGAAGTGCTTGACTTTCTTTCTTCTGCTTCCAGAGACCTTAAAGAAGTCTAGAAAGAGTGCGAGGGCACAGGGCAAGGTGCAGGCATGCTATGAGATAGTGCCCTTGGCCCTCAAGAAGAAGATGGCTGCAGAGCTTTACCCTGCCAGCGCAAACACCAATATCGCCAACAGTAACGCCACTGCCAACGCCAAGAAGAACGCCCTCCAACTCCAGCACACTGCCCCGCCGCCGCCGCAACTGCACAACCTCAACAACAACAACATTGAGAGCAGCAACTGGCAGTCCTTCCACCCGACCCTGCGCGAGAGGAATGCTCTGATGTTCAACAACGAGCTTATGGCGGATGTTCATTTCATTGTGGGCCCAGCAGGGGCTTCAAAGAAAGTTCCTGCTCACAAGTATATTTTGGCTGTGGGTAGCTCTGTGTTCTACGCAATGTTTTATGGAGACCTTGCTGAAGTGAAATCCGAAATCCATATTCCAGATGTGGAGCCTGCAGCTTTTCTAATCCTTTTAAAGTACTTGTACAGTGATGAAATTGACCTGGAAGCAGACACTGTGCTTGCAACACTGTATGCTGCCAAAAAGTACATTGTGCCGGCCTTGGCTAAAGCCTGTGTTAATTTCCTGGAGACTAGTTTGGAGGCAAAGAACGCTTGTGTTCTGCTCTCTCAGAGCCGTCTTTTTGAAGAGCCAGATCTTACTTTGCGTTGCTGGGAGGTCATAGACGCTCAAGCGGAACTGGCACTAAAGTCAGAGGGTTTCTGTGAAATAGACCTGCCAACCCTGGAGATTATTGTTACACGTGAGACACTAAACACTAAAGAAGATGTTGTGTTTGAGGCAGTTTTGAACTGGGCTGAGGCAGAGTGCAAAAGACAAGGTTTGCCAATCACTCCAGTCAACAAGAGGAATGTTTTGGGAAAGGCCTTATACTTGGTACGGATTCCCACTATGACTTTGGAGGAATTTGCCAATGGAGCTGCCCAGTCAGATATTTTAACCCTAGAGGAAACCAGAAGTATATTCCTCTGGTACACGGCTGCTAATAAACCTCAGCTGGAGTTCCCTCTAATAAAAAGGAAAGGACTTGCACCTCAGCGTTGCCACAGGTTTCAGTCCTCGGCATATCGCAGTAATCAGTGGAGGTACCGGGGACGCTGTGACAGCATCCAATTTGCAGTCGACAAAAGGATATTCATAGCAGGACTGGGGCTTTATGGTTCGAGCTGTGGCAAAGCAGAGTACAGCGTCAAGATAGAACTGAAGAGACAGGGCGTAGTTCTGGCCCAAAACCTGACTAAGTTTGTTTCTGATGGCTGTAGTAATACATTCTCTGTGTGGTTTGAACACCCCGTACAGGTAGAGCAAGATACTTTTTACACTGTAAGCGCCATTCTTGATGGTAATGAACTCAGTTATTTCGGACAGGAGGGAATGACAGAAGTACAGTGTGGAAAGGTTACATTTCAATTCCAGTGCTCTTCAGACAGCACCAATGGGACTGGGGTACAAGGTGGACAAATTCCAGAACTCATCTTTTATGCATGATGCATTTCACTTCTAGAAGACTACTGCAAAGCACACAGACTCTCCCACCCACCCTTCCCTCTTGAAAGGGGCCTGCAGCACAGTAGTTTAACCAGCTTTCTGCTGGTTGTACCTGCAATGCACTGAAAAGGTTGAAGGGAGAGTCTTAATTTATGCTGTTTGTCAGTATGGAATGTAGCAAAATGGTCAAAAAAACACCCAACTGAAGAAATGCTTGTAGGATTGAATCTAATTTTATTTATTTATAAGCTATTTGAATTTAATTATTAAAACTGCATCATGCAGGGAGAGGTTTAAAAAAAAAATCTGCGCATAATGTGCATTTATTTTGTATATAGATAATTTACTTAAAATGCAGCTTGCTCAGGGTAGAGCAGCTTATAAATATGCGAGACATAAAATGTTTTTACTTATACCCTAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001072310\|BTB/POZ domain-containing protein 6 [Xenopus (Silurana) tropicalis] MPLDPGCLNGRVMKCLTFFLLLPETLKKSRKSARAQGKVQACYEIVPLALKKKMAAELYPASANTNIANSNAAANAKKNALQLQQAAPPPPQLHNLNNNNIESGNWQSFHPTLRERNALMFNNELMADVHFIVGPAGASKKVPAHKYILAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYLYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPDLTLRCWEVIDAQAELALKSEGFCEIDLQTLEIIVTRETLNTKEDVVFEAVLNWAEAECKRQGLSITPVNKRNVLGKALYLVRIPTMTLEEFANGAAQSDILTLEETRSIFLWYTAANKPQLEFPLIKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDKRIFIAGLGLYGSSCGKAEYSVKIELKRQGAVLAQNLTKFVSDGSSNTFSVWFEHPVQVEQDTFYTVSAILDGNELSYFGQEGMTEVQCGKVTFQFQCSSDSTNGTGVQGGQIPELIFYA UniProtKB	Refseq >NP_001082188\|BTB/POZ domain-containing protein 6 [Xenopus laevis] MPLDPGCLNGRVMKCLTFFLLLPETLKKSRKSARAQGKVQACYEIVPLALKKKMAAELYPASANTNIANSNATANAKKNALQLQHTAPPPPQLHNLNNNNIESSNWQSFHPTLRERNALMFNNELMADVHFIVGPAGASKKVPAHKYILAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYLYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPDLTLRCWEVIDAQAELALKSEGFCEIDLPTLEIIVTRETLNTKEDVVFEAVLNWAEAECKRQGLPITPVNKRNVLGKALYLVRIPTMTLEEFANGAAQSDILTLEETRSIFLWYTAANKPQLEFPLIKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDKRIFIAGLGLYGSSCGKAEYSVKIELKRQGVVLAQNLTKFVSDGCSNTFSVWFEHPVQVEQDTFYTVSAILDGNELSYFGQEGMTEVQCGKVTFQFQCSSDSTNGTGVQGGQIPELIFYA UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny

Expression		tropicalis	laevis
UniGene		Str.52683	Xl.34957
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		6 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human			BTBD6
mouse		MGI	Btbd6	All(1) Targeted, knock Out(1)
zebrafish		ZFIN ZFIN	btbd6a btbd6b

Publications
First:		Systematic screening and expression analysis of the head organizer genes in Xenopus embryos. [Dev Biol 2001]
Most recent:		Xenopus BTBD6 and its Drosophila homologue lute are required for neuronal development. [Dev Dyn 2008]
		View All Papers

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.16258.1.S1_at	Xl.16422.1.A1_at
Affymetrix 2.0			Xl2.34957.1.S1_at

Symbol legend[+]