cldn7 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Nucleotides (870)

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XB-GENEPAGE-5786133

[provisional- machine annotated only] Gene Symbol: cldn7 [Predicted: Source is Human Entrez Gene] Gene Name: claudin 7 [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: integral membrane protein, tight junction component Interactants:

XB-GENE-5786134

XB-GENE-6078955

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_203746\|Xenopus (Silurana) tropicalis claudin 7 (cldn7), mRNA GCGGAGGAAGGAGACGGATCGGATTCTATCGGCCGGGGATAAACTACTCGATCGTTCGGAGCCCCCCCCCCCCCCCCCAGCAGCAGCGAGGAGTAGGGGCCCCTGTGTGTCCCTGAGCTTGTACTTACCCCCCCTAGTGCAGGGGCAAAGGACTCCTACCTACCCCCACACTCCAACCCCCCAGGGATGGCCAACTCCGGGCTGCAGCTGCTGGGCTTCGTACTGGCGCTGCTGGGATGGATCGCACTAATCGCAGCGACTATTATGCCGCAGTGGAAGATGTCCTCCTATGCCGGGGACCAGATCATCACGGCGGTGGCGATTTACCAAGGGCTGTGGATGTCTTGCGCCACCCAGAGTACGGGGCAGATTCAGTGCAAAGTCTATGACTCCCTACTGCAGCTGGACGCATCTCTGCAGGCCACGCGGGCACTCATGGTGGTCTCCATCATCCTGGGGGTATTTGGCCTCGCCATATCTACCATGGGCATGAAATGCACCAACTGTGGGGGGGATGACAAAGTGAAGAAGTCTCGCATTGCAATGACTGGCGGATTTGTCTTTCTGATTGGGGGTCTGGCAGCGCTCATTGCCTGCTCCTGGTATGGGAACCAGATCATTCGGGATTTTATTGATGAAGTTTGTAAAGGGCATTGGGGGGGATTTTAACACTGATACCCTAATCCCAGATCAGCAGTAAGTGCAAGTGGGCCTGAGCCTGGGGTGTAGGGGCCCCCCATTATGTATCTAGATTTATACGCTTTGTGACTTGTAGCAGATTTTCTTGTTTTTGTAAATAAAACTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001086240\|Xenopus laevis claudin 7 (cldn7), mRNA GAGCGAGAGGAGCGGATCGGGCTGTTTGTTGGTGTCGCTGGTAGAAAGTGGTGGATCGCTGAGCAGTTGGGCCCCTGTGTGTCGCTAGAGATCCCCGAGCTTCTTGTCCCGGGGCCACACACTCGTTCTTGCCCCAGTCATGGCCAACTCCGGGCTGCAGCTCCTCGGCTTCGTGCTGGCGATGTTGGGTTGGATCGCACTGATCGCAGCGACTATTATGCCCCAGTGGAAGATGTCCTCGTACGCCGGGGACCAGATCATCACCGCCGTGGCCATTTATCAGGGACTGTGGATGAGTTGCGCCACTCAGAGCACCGGGCAAATCCAGTGCAAAGTCTATGACTCCATATTACAGCTGGACGCATCTCTGCAGGCCACCCGGGCCCTCATGGTGGTCTCCATCATCCTGGGCATATTTGGAATTGCCGTATCTACCATGGGCATGAAATGCACAACCTGTGGGGGAGATGATAAGGTGAAAAAGTCTCGCATTGCAATGACTGGTGGATTTGTCTTTCTCCTTGGGGGTCTTGCAGCTCTCATTGCCTGCTCCTGGTATGGCAATCAGATTATTCGGGATTTCTACAACCCTCTTCTGCCAATCAATACCAAGTATGAGTTTGGTGCTGGTGTGTTCCTTGGCTGGGCCGGTTCCTTCCTGGTTCTTATAGGAGGAGGCCTGTTGTCGTGCTCATGTTCCCGCAAGAATAACTACCAGAAGGGGTACCCCAAGTCTGGAGCGAAGTCTAAAGTTCCATCTTCTGGAAGGGACTATGTCTGATCATGCAAACCTTGTTACACACCTTATTCAAGCAGCACACATCCAGGTCACAGCCCTCCACTTGCATCCCAGCATTCAGCACTTAATGGAGAAGAAGAACTCCGATTGGACAGAGCTTGCTATGTTGTACCCCACCCCGAGGTGGCCATGTTTGGACCCTTCCTGTATAATGTGACTGGCGGGGTGAAGTGGAGGGACACTGGGGTGCTGCGTCCAACTCCATTTGTGTGACTGAAGAATGAACTGACATTTTTTGTGCTTGTTAAACCTCTTTATTATAATAATGCAGCTGATTGGCTGTGCTGGGCAAATATGTGATATGGGGGGGGGGCTTTTATCGTTAATGAAGTTTGTAAAGGGCATTATTGCGGAATTTTAACTCAAATGCCCAATTCCCCAGATTAACAAAAAGCAAGTGTGCCTGACTCTGAGTCGGCTTGCTCATCGGGTTGTAGGGTGCCCTAGAACCCCACTATGTATCTTGTCTAGATTTATATGCTTTATAACTTGTAGCAGATTTGTTTCGTTTTTGTAAATAAAACACAATTTTTTTTCAATGGAAAAAAAAAAAAAAA
Protein		Refseq >NP_989077\|claudin 7 precursor [Xenopus (Silurana) tropicalis] MANSGLQLLGFVLALLGWIALIAATIMPQWKMSSYAGDQIITAVAIYQGLWMSCATQSTGQIQCKVYDSLLQLDASLQATRALMVVSIILGVFGLAISTMGMKCTNCGGDDKVKKSRIAMTGGFVFLIGGLAALIACSWYGNQIIRDFIDEVCKGHWGGF	Refseq >NP_001079709\|claudin 7 [Xenopus laevis] MANSGLQLLGFVLAMLGWIALIAATIMPQWKMSSYAGDQIITAVAIYQGLWMSCATQSTGQIQCKVYDSILQLDASLQATRALMVVSIILGIFGIAVSTMGMKCTTCGGDDKVKKSRIAMTGGFVFLLGGLAALIACSWYGNQIIRDFYNPLLPINTKYEFGAGVFLGWAGSFLVLIGGGLLSCSCSRKNNYQKGYPKSGAKSKVPSSGRDYV

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.4078 [+] Str.37826 Str.42987 Str.64691 Str.67510	Xl.21357
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		4 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	CLDN7
mouse		MGI	Cldn7	All(3) Targeted, knock Out(1) Targeted, other(2)
zebrafish		ZFIN ZFIN	cldn7a cldn7b	4 Lines(s)

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		structural molecule activity
Biological:
Cellular Component:		membrane tight junction
EC:
KOG:

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.4078.1.S1_a_at [+] Str.37826.1.S1_at Str.42987.1.A1_x_at Str.49130.2.S1_x_at Str.49130.2.S1_a_at	Xl.21357.1.S1_at [+] Xl.21357.1.S1_a_at Xl.21357.2.S1_at
Affymetrix 2.0			Xl2.21357.1.S1_a_at [+] Xl2.21357.1.S1_at Xl2.21357.2.S1_at

Symbol legend[+]