rpl4 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (1)

Nucleotides (4240)

Interactants (2)

XB-GENEPAGE-968394

Gene Symbol: rpl4 [Predicted: Source is Human Entrez Gene] Gene Name: ribosomal protein L4 [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: Ribosomal protein RPL1/RPL2/RL4L4 Interactants: cxcr4(1) , lap3(1) , View All

XB-GENE-968395

XB-GENE-968399

XB-GENE-6255762

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001171532\|Xenopus (Silurana) tropicalis ribosomal protein L4 (rpl4), mRNA GGCCGCTGTGGAGAAGCAGCGAGGAGATGGCGGTCAGCATGGCCTGCGCCCGTCCGCTAATATCAGTATACTCCGAGAAGGGGGAAACATCTGGCAAAAATGTCACCATGCCTGCAGTGTTCAAGGCACCTATTCGGCCTGATATAGTCAACTTTGTCCACACAAACCTACGCAAGAATAACCGCCAGCCATACGCAGTGAGCGAGCTTGCTGGTCACCAAACAAGTGCTGAATCATGGGGAACTGGTCGAGCTGTTGCCCGTATTCCCCGTGTGCGTGGAGGAGGAACTCACCGTTCCGGTCAGGGTGCCTTCGGAAACATGTGTCGTGGAGGGCGTATGTTTGCCCCAACTAAGACCTGGAGACGCTGGCACCGTAGAGTCAACACAACCCAAAAGCGCTATGCAGTCTGCTCTGCACTGGCCGCCTCAGCCCTTCCTGCTCTTGTTATGTCTAAAGGTCACCGTATTGAGGAGATCCCTGAGGTTCCCCTTGTTGTTGAAGATAAAGTTGAGAGCTATAAGAAAACAAAGGAAGCTGTCCTTCTGCTGAAAAAGCTCAAAGCCTGGAATGACATAAAGAAGGTTTATGCGTCTCAGCGTATGCGTGCTGGAAAGGGTAAGATGAGGAACAGACGTCGCATTCAGCGCAGAGGTCCCTGTGTTGTTTACAATGAAAATAACGGCATTGTAAAAGCCTTCAGAAACATCCCAGGAATCACCCTCCTGAATGTAAGCAAGTTGAACCTTTTAAGGCTTGCTCCTGGTGGTCATGTTGGACGGTTCTGCATTTGGACAGAAAGCGCCTTCCGCAAATTGGATGACCTCTATGGTACATGGCGCAAATCAGCCAAGCTGAAGGCAGATTACAACCTTCCAATGCACAAGATGACAAACACAGATTTGACCAGAATCCTGAAAAGCCAGGAGATCCAGAGGGCTTTGCGGGCTCCAAACAAAAAGGTGAAGAGAAGGGAGCTCAAGAAGAACCCACTGAAGAACCTGAGAATCATGATGAGGCTGAACCCATATGCAAAGACAGCAAGACGTCATGCTATCCTGCAGCAGCTTGAGAATATTAAAGCTAAAGAAAAGAAGCCAGATGATGGCAAGCCTAAAGCAAAGAAGCCACTTGATGCAAAAACTAAAATGATCAAGTTGGCCAAAGCAAAGAAGAGGCAAGCCAGAGCGGAAGCTAAAGCAGCAGAGTCAAAGTAATCCTGGAGTGTTTCCTCCTGTTCAGCACTTTGGATTTACTCAATAAATTGTTTCAAACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001087076\|Xenopus laevis ribosomal protein L4 (rpl4-a), mRNA CTGTGGAGAAGCAGCGAGGAGATGGCGGTCAGCATGGCCTGCGCTCGTCCGCTAATATCGGTGTACTCCGAGAAGGGGGAATCATCTGGCAAAAATGTCACCATGCCTGCAGTATTCAGGGCACCCATTCGGCCTGATATTGTCAACTTTGTCCACACAAACCTTCGCAAGAATAACCGCCAACCCTACGCAGTGAGCAAACTTGCTGGTCACCAAACAAGTGCTGAATCGTGGGGAACTGGTCGAGCCGTTGCTCGTATTCCCCGTGTGCGTGGAGGAGGAACCCACCGTTCTGGTCAGGGTGCCTTCGGAAACATGTGTCGTGGTGGGCGTATGTTTGCCCCAACTAAGACCTGGAGACGCTGGCATCGTAGAGTCAATACAACACAGAAGCGCTATGCAGTCTGCTCTGCACTGGCCGCCTCAGCCCTTCCTGCTCTTATTATGTCTAAAGGTCACCGTATTGAGGAGATCCCCGAGGTTCCCCTTGTTGTTGAAGATAAAGTAGAGAGCTATAAGAAAACAAAGGAAGCTGTCCTGCTGTTAAAGAAGCTGAAAGCCTGGAATGACATAAAGAAGGTTTATGCTTCTCAGCGTATGCGTGCTGGGAAAGGTAAGATGAGGAACAGACGTCGCATTCAGCGCAGAGGACCCTGTGTTATCTACAATGAAAATAATGGCCTTGTAAAAGCCTTCAGAAATATCCCAGGCATCACCCTCCTCAATGTAAGCAAGCTGAACCTTTTAAGGCTAGCTCCTGGTGGTCATGTTGGACGGTTCTGTATCTGGACAGAAAGCGCCTTCCGCAAATTAGATGATCTCTACGGTACATGGCGCAAATCAGCCAAGCTGAAGGCAGATTACAACCTTCCAATGCACAAGATGACAAACACAGATCTGACCAGAATCCTGAAAAGCCAGGAGATCCAGAGGGCTCTGAGGGCTCCAAACAAAAAGGTGAAGAGAAGGGAGCTCAAGAAGAACCCTCTGAAGAATCTGAGAATCATGATGAGGCTGAACCCATATGCAAAGACTGCAAGACGTCATGCTATCCTGCAGCAGCTTGAGAATATTAAAGCTAAAGAAAAGAAGCCAGATGATGGTAAACCTAAAGCAAAGAAGCCACTTGATGCAAAAACTAAAATGATCAAGCTGGCCAAAGCAAAGAAAAGGCAAGCCAGGGAAGCAGCTAAGGCAGCGGAAACAAAGTAATCCCAGAGCGTTATCTCATGTTCAGCACTTTGGATTTACTCAATAAATTCTGTTTAATAAAAAAAAAAAAAAAAAAAAAAAAA		Refseq >NM_001089252\|Xenopus laevis ribosomal protein L4 (rpl4-b), mRNA GCCTTTTTCTTCGTGGCCGCTGTGGAGAAGCAGCGAGGAGATGGCGGTCAGCATGGCCTGCGCTCGTCCGCTAATATCAGTGTACTCTGAAAAGGGGGAAACATCTGGCAAAAATGTCACCATGCCTGCAGTGTTCAAGGCCCCTATTCGGCCTGATATTGTCAACTTTGTTCACACAAACCTGCGCAAGAATAACCGTCAACCCTACGCAGTGAGCAAGCTTGCTGGTCACCAAACAAGTGCTGAATCATGGGGAACAGGTCGAGCTGTTGCTCGTATTCCCCGTGTGCGCGGAGGAGGAACTCACCGTTCTGGTCAGGGTGCCTTTGGAAACATGTGTCGTGGTGGGCGTATGTTTGCCCCAACCAAGACCTGGAGACGCTGGCATCGTAGAGTCAATACGACCCAAAAGCGCTATGCGGTCTGCTCTGCACTGGCTGCCTCAGCCCTTCCTGCTCTTATTATGTCTAAAGGTCACCGTATTGAGGAGATCCCCGAGGTTCCCCTTGTTGTTGAAGATAAAGTGGAAAGCTATAAGAAAACAAAGGAAGCAGTCCTTTTGTTGAAGAAGCTGAAAGCCTGGAATGACATAAAGAAGGTTTATGCTTCTCAGCGTATGCGCGCCGGGAAAGGTAAGATGAGGAACAGACGCCGAATTCAGCGCAGAGGGCCCTGTGTAATCTACAATGAAAATAACGGCATTATAAAAGCCTTCAGAAATATCCCAGGTATCACCCTCCTCAATGTAAGCAAGCTGAACCTTTTAAGGCTAGCTCCTGGTGGCCACGTTGGACGGTTCTGTATTTGGACAGAAAGCGCATTCCGCAAATTAGATGATCTCTACGGTACATGGCGCAAATCAGCCAAGCTGAAGGCAGATTACAACCTTCCAATGCACAAGATGACAAACACAGATCTGACCAGAATCCTAAAAAGTCAGGAGATCCAGCGGGCTCTGCGTGCTCCAAACAAAAAGGTGAAGCGAAGGGAGCTGAAGAAGAACCCACTGAAGAACCTAAGAATCATGATGAGGCTGAACCCATATGCAAAGACCGCAAGGCGTCATGCTATCCTGCAGCAGCTTGAGAATATTAAAGCTAAAGAAAAGAAGCCAGATGATGGTAAGCCTAAAGCAAAGAAGCCACTGGATGCAAAAACAAAAATGATCAAGCTGGCCAAAGCAAAAAAGAGGCAAGCCAGGGCAGAGGCTAAGACGGCAGAGGCTAAGACGGCAGAATCGAAGTAATCCCAGAGCGTTTGTCTCATGTTCAGCACTTTGGATTTACTCAATAAATTCTGTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001165003\|60S ribosomal protein L4 [Xenopus (Silurana) tropicalis] MAVSMACARPLISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALVMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVVYNENNGIVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQARAEAKAAESK UniProtKB	Refseq >NP_001080545\|60S ribosomal protein L4-A [Xenopus laevis] MAVSMACARPLISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQAREAAKAAETK UniProtKB		Refseq >NP_001082721\|60S ribosomal protein L4-B [Xenopus laevis] MAVSMACARPLISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTKMIKLAKAKKRQARAEAKTAEAKTAESK UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		[+] Str.74704 Str.79119	Xl.8672 [+] Xl.17821		Xl.8805
Unigene EST Profile			EST Profile		EST Profile
GEO data			GEO		GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	RPL4
mouse		MGI	Rpl4	All(1) Targeted, other(1)
zebrafish		ZFIN	rpl4

Publications
First:		Functional interaction between RNA helicase II/Gu(alpha) and ribosomal protein L4. [FEBS J 2005]
Most recent:
		View All Papers

Functional Ontologies
GO: Molecular:		oxidoreductase activity structural constituent of ribosome
Biological:		metabolic process translation
Cellular Component:		intracellular ribosome
EC:
KOG:		[A] Ribosomal protein RPL1/RPL2/RL4L4

Reagents		tropicalis	laevis a		laevis b
Clones			open biosystems		open biosystems
			geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		StrJgi.3876.1.S1_s_at [+] StrJgi.3876.1.S1_at Str.26343.1.A1_at Str.43609.1.A1_at Str.44547.1.A1_at Str.45912.1.A1_x_at	Xl.8672.1.S1_at [+] Xl.6071.1.A1_at		Xl.8805.1.S1_at [+] Xl.8805.1.S1_s_at
Affymetrix 2.0			Xl2.8672.1.S1_s_at [+] Xl2.8672.1.S1_at Xl2.17821.1.A1_at Xl2.46848.1.A1_at		Xl2.8805.1.S1_at

Symbol legend[+]