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XB-GRNA-23659747
gRNA Name:
ptf1a gRNA3
Synonyms: ptf1a/p48-T2
Genomic Target: ptf1a
PAM Sequence: AGG
Sequence: 5' GGAGATGCAGCAGCTCAGGC 3'
Synonyms: ptf1a/p48-T2
Genomic Target: ptf1a
PAM Sequence: AGG
Sequence: 5' GGAGATGCAGCAGCTCAGGC 3'
| Genomic Target | tropicalis | laevis.L | |||||
| Identities | 20/20 | 20/20 | |||||
genome
gRNA
|
5' GCCTGAGCTGCTGCATCTCC 3' |||||||||||||||||||| 3' CGGACTCGACGACGTAGAGG 5' |
5' GCCTGAGCTGCTGCATCTCC 3' |||||||||||||||||||| 3' CGGACTCGACGACGTAGAGG 5' |
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| Genomic Alignments |
Position | Identity | Strand | Target | Genomic Target | ||
| laevis 10.1 | Chr6L:25818325..25818344 | 20/20 | Sense | target | ptf1a.L | ||
| Chr9_10S:38972961..38972980 | 16/20 | Antisense | off-target | fdxr.S | |||
| Chr6L:56810638..56810657 | 16/20 | Antisense | off-target | ulk4.L | |||
| Chr1L:218414719..218414738 | 16/20 | Antisense | off-target | pdzd2.L | |||
| Chr1S:44584849..44584868 | 16/20 | Antisense | off-target | fbxw7.S | |||
| Chr4L:146206145..146206164 | 16/20 | Antisense | off-target | prickle2.L | |||
| Chr9_10L:52315309..52315328 | 18/20 | unknown | |||||
| Chr4S:114800932..114800951 | 18/20 | unknown | |||||
| Chr6L:20034325..20034344 | 18/20 | unknown | |||||
| Chr1S:38873342..38873361 | 17/20 | unknown | |||||
| Chr5L:69401270..69401289 | 17/20 | unknown | |||||
| Chr7S:76077825..76077844 | 17/20 | unknown | |||||
| Chr8S:66836488..66836507 | 16/20 | unknown | |||||
| Chr6S:46449459..46449478 | 16/20 | unknown | tropicalis 10.0 | Chr6:26467531..26467550 | 20/20 | Sense | target | ptf1a |
| Chr2:22806657..22806676 | 18/20 | Antisense | off-target | pou1f1 | |||
| Chr8:520551..520570 | 18/20 | Sense | off-target | ccdc120 | |||
| Chr8:75382061..75382080 | 17/20 | Antisense | off-target | abcf1 | |||
| Chr4:148872629..148872648 | 17/20 | Antisense | off-target | arhgef3.2 | |||
| Chr6:53494640..53494659 | 16/20 | Antisense | off-target | ulk4 | |||
| Chr2:62635892..62635911 | 16/20 | Antisense | off-target | ap4b1 | |||
| Chr6:91849397..91849416 | 16/20 | Antisense | off-target | ranbp9 | |||
| Chr6:1479634..1479653 | 19/20 | unknown | |||||
| Chr6:21240005..21240024 | 18/20 | unknown | |||||
| Chr1:156759079..156759098 | 16/20 | unknown | |||||
| Publications | |||||||
| ???morpholino.displaySummary.papersFirst??? |
Targeted gene disruption in Xenopus laevis using CRISPR/Cas9., Cell Biosci 2015 |
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| ???morpholino.displaySummary.papersRecent??? | |||||||
| ???morpholino.displaySummary.papersAll??? | |||||||
